Files in thomazbastiaanssen/anansi

Annotation-Based Analysis of Specific Interactions

R/AllClasses.R R/ParseOutput.R R/all_argonaut_support.R R/anansi.R R/anansiCorTestByGroup.R R/anansiPAdjust.R R/anansi_diff_cor_qr.R R/anansi_plot_diff_cor.R R/clr_lite.R R/data.R R/diagrammer_split_threeway.R R/getAnansi.R R/graph_design.R R/set_get_web_tale_yarn.R R/weaveWebFromTables.R README.Rmd README.md man/FMT_KOs.Rd man/FMT_metab.Rd man/FMT_metadata.Rd man/KO_member_dic.Rd man/KO_translation.Rd man/anansi.Rd man/anansiCor.Rd man/anansiCorPvalue.Rd man/anansiCorTestByGroup.Rd man/anansiDiffCor.Rd man/anansiInput-class.Rd man/anansiOutput-class.Rd man/anansiTale-class.Rd man/anansiTranslate.Rd man/anansiWeb-class.Rd man/anansiYarn-class.Rd man/anansi_compute_clr.Rd man/anansi_dic.Rd man/argonansiWeb-class.Rd man/argonaut_parse_diff.Rd man/argonaut_parse_full.Rd man/argonaut_parse_tot.Rd man/argonaut_rep_to_strat.Rd man/assessWebCall.Rd man/clr_imputed.Rd man/clr_lite.Rd man/collate_model_output_argonaut.Rd man/cpd_translation.Rd man/gather_plot.Rd man/getAnansi.Rd man/getAnansiResults.Rd man/get_strat_X.Rd man/glm_argonaut_calc_diff_cor.Rd man/impute_zeroes.Rd man/makeAdjacencyMatrix.Rd man/makeAdjacencyMatrixFromGroupMemberList.Rd man/makeAdjacencyMatrixFromList.Rd man/mock_dictionary.Rd man/plot-anansiYarn-ANY-method.Rd man/print-anansiYarn-method.Rd man/prune_dictionary_for_exclusivity.Rd man/show-anansiYarn-method.Rd man/softmax.Rd man/spinToLong.Rd man/spinToPlots.Rd man/spinToWide.Rd man/summary-anansiYarn-method.Rd man/weaveWebFromStratifiedTables.Rd man/weaveWebFromTables.Rd tests/testthat.R tests/testthat/test-anansi_diff_cor_qr.R tests/testthat/test-getAnansi.R vignettes/anansi.Rmd vignettes/differential_associations.Rmd