raw_fusion5267reads: Fusion5267and11759 bamfile
In stianlagstad/chimeraviz: Visualization tools for gene fusions
raw_fusion5267reads R Documentation
Fusion5267and11759 bamfile
Description
Documentation for the fusion5267and11759reads.bam file containing reads
mapped to the region where the genes in the fusions with cluster_id=5267 and
cluster_id=11759 is.
fusion5267and11759reads.bam
This file is the result of running these commands:
samtools view -b original_bamfile.bam "1:28831455-28866812" "1:109189912-109205148" "12:8608225-8677832" > fusion5267and11759reads.bam
samtools index fusion5267and11759reads.bam fusion5267and11759reads.bam.bai
where we extract the reads mapping to the region where we know the fusions
with cluster_id=5267 and cluster_id=11759 from the deFuse example data is.
The original_bamfile.bam is from a study of the 833KE cell line by Andreas M. Hoff et al., documented in the paper [Identification of Novel Fusion Genes in Testicular Germ Cell Tumors](http://cancerres.aacrjournals.org/content/76/1/108.full).
stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.
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| raw_fusion5267reads | R Documentation |
Fusion5267and11759 bamfile
Description
Documentation for the fusion5267and11759reads.bam file containing reads mapped to the region where the genes in the fusions with cluster_id=5267 and cluster_id=11759 is.
fusion5267and11759reads.bam
This file is the result of running these commands:
samtools view -b original_bamfile.bam "1:28831455-28866812" "1:109189912-109205148" "12:8608225-8677832" > fusion5267and11759reads.bam samtools index fusion5267and11759reads.bam fusion5267and11759reads.bam.bai
where we extract the reads mapping to the region where we know the fusions with cluster_id=5267 and cluster_id=11759 from the deFuse example data is.
The original_bamfile.bam is from a study of the 833KE cell line by Andreas M. Hoff et al., documented in the paper [Identification of Novel Fusion Genes in Testicular Germ Cell Tumors](http://cancerres.aacrjournals.org/content/76/1/108.full).
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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