get_fusion_by_chromosome: Find fusions that involves genes in the given chromosome.
In stianlagstad/chimeraviz: Visualization tools for gene fusions
View source: R/get_fusion_by.R
get_fusion_by_chromosome R Documentation
Find fusions that involves genes in the given chromosome.
Description
Helper function to retrieve the Fusion objects that involves genes in the
given chromosome name.
Usage
get_fusion_by_chromosome(fusion_list, chr)
Arguments
fusion_list
A list of Fusion objects.
chr
The chromosome name we're looking for fusions in.
Value
A list of Fusion objects.
Examples
defuse833ke <- system.file(
"extdata",
"defuse_833ke_results.filtered.tsv",
package="chimeraviz")
fusions <- import_defuse(defuse833ke, "hg19", 1)
length(get_fusion_by_chromosome(fusions, "chr1"))
# [1] 1
stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.
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View source: R/get_fusion_by.R
| get_fusion_by_chromosome | R Documentation |
Find fusions that involves genes in the given chromosome.
Description
Helper function to retrieve the Fusion objects that involves genes in the given chromosome name.
Usage
get_fusion_by_chromosome(fusion_list, chr)
Arguments
fusion_list |
A list of Fusion objects. |
chr |
The chromosome name we're looking for fusions in. |
Value
A list of Fusion objects.
Examples
defuse833ke <- system.file(
"extdata",
"defuse_833ke_results.filtered.tsv",
package="chimeraviz")
fusions <- import_defuse(defuse833ke, "hg19", 1)
length(get_fusion_by_chromosome(fusions, "chr1"))
# [1] 1
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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