import_function_non_ucsc: Alternative import function for Gviz::AlignmentsTrack
In stianlagstad/chimeraviz: Visualization tools for gene fusions
import_function_non_ucsc R Documentation
Alternative import function for Gviz::AlignmentsTrack
Description
This alternative import function for use with Gviz::AlignmentsTrack imports
a bamfile with non-UCSC chromosome names.
Usage
import_function_non_ucsc(file, selection)
Arguments
file
The bamfile.
selection
Which regions to get from the bamfile.
Value
A GRanges object with coverage data for the selection.
stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.
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| import_function_non_ucsc | R Documentation |
Alternative import function for Gviz::AlignmentsTrack
Description
This alternative import function for use with Gviz::AlignmentsTrack imports a bamfile with non-UCSC chromosome names.
Usage
import_function_non_ucsc(file, selection)
Arguments
file |
The bamfile. |
selection |
Which regions to get from the bamfile. |
Value
A GRanges object with coverage data for the selection.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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