import_prada: Import results from a PRADA run into a list of Fusion...
In stianlagstad/chimeraviz: Visualization tools for gene fusions

import_prada

R Documentation

Import results from a PRADA run into a list of Fusion objects.

Description

A function that imports the results from a PRADA run into a list of Fusion objects.

Usage

import_prada(filename, genome_version, limit)

Arguments

`filename`	Filename for the PRADA results file.
`genome_version`	Which genome was used in mapping (hg19, hg38, etc.).
`limit`	A limit on how many lines to read.

Value

A list of Fusion objects.

Examples

pradaData <- system.file(
  "extdata",
  "PRADA.acc.fusion.fq.TAF.tsv",
  package = "chimeraviz")
fusions <- import_prada(pradaData, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.

stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.