downstream_partner_gene: Get the downstream fusion partner gene

In stianlagstad/chimeraviz: Visualization tools for gene fusions

Get the downstream fusion partner gene

Description

This getter retrieves the downstream PartnerGene object.

This sets the downstream PartnerGene object of a Fusion object

Usage

downstream_partner_gene(x)

## S4 method for signature 'Fusion'
downstream_partner_gene(x)

downstream_partner_gene(object) <- value

## S4 replacement method for signature 'Fusion'
downstream_partner_gene(object) <- value

Arguments

x	The Fusion object you wish to retrieve the downstream PartnerGene object for.
object	The Fusion object you wish to set a new downstream PartnerGene object for.
value	The new PartnerGene object.

Value

The downstream PartnerGene object.

Examples

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- import_defuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Get the downstream fusion partner gene
downstream_partner_gene(fusion)

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- import_defuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Set the downstream PartnerGene object to be the same as the upstream
# PartnerGene object
downstream_partner_gene(fusion) <- upstream_partner_gene(fusion)

stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.