Man pages for stela2502/StefansExpressionSet
StefansExpressionSet
| add2usedObj-methods | description of function add2usedObj |
| addAnnotation-methods | description of function addAnnotation |
| addCluster-methods | description of function addCluster |
| addGeneColGroup-methods | description of function addGeneColGroup |
| addSampleColGroup-methods | description of function addSampleColGroup |
| anayse_working_set-methods | description of function anayse_working_set |
| as_BioData-methods | description of function as |
| as_NGSexpressionSet-methods | description of function as_NGSexpressionSet |
| bestGrouping | description of function randomForest |
| check.depth-methods | description of function check |
| clusters-methods | description of function clusters |
| coexprees4gene-methods | description of function coexprees4gene |
| collaps-methods | description of function collaps |
| colors_4-methods | description of function createRFgrouping_col |
| complexHeatmap-methods | description of function plot.beans |
| cor2cytoscape-methods | description of function cor2cytoscape |
| corMat-methods | description of function corMat |
| createRFgrouping_col-methods | description of function createRFgrouping_col |
| createRFgrouping_row-methods | description of function createRFgrouping_row |
| createStats-methods | description of function createStats |
| defineHeatmapColors-methods | description of function gg.heatmap.list |
| describe.probeset-methods | description of function describe.probeset |
| difference-methods | description of function difference |
| drop.samples-methods | description of function drop.samples |
| export4GEDI-methods | description of function export4GEDI |
| export.data-methods | description of function write.data |
| forceAbsoluteUniqueSample-methods | description of function forceAbsoluteUniqueSample |
| force.numeric-methods | description of function force.numeric |
| FromCountsObj-methods | description of function FromCountsObj |
| getAnnotation4probesets-methods | description of function getAnnotation4probesets |
| get_gene_list-methods | description of function get_gene_list |
| getProbesetsFromStats-methods | description of function getProbesetsFromStats |
| getProbesetsFromValues-methods | description of function getProbesetsFromValues |
| gg.heatmap.list-methods | description of function gg.heatmap.list |
| ggplot.gene-methods | description of function ggplot.gene |
| group.hclust-methods | description of function group.hclust |
| groups.boxplot-methods | description of function groups.boxplot |
| identifyBestGrouping-methods | description of function identifyBestGrouping |
| interesting_genes-methods | description of function interesting_genes |
| loadObj-methods | description of function loadObj |
| log2-methods | description of function log2 |
| Make3D4obj-methods | description of function Make3D4obj |
| mds-methods | description of function mds.and.clus |
| melt-methods | description of function melt |
| minValueExpr-methods | description of function gg.heatmap.list |
| name_4_IDs-methods | description of function name_4_IDs |
| NGSexpressionSet | NGSexpressionSet |
| NGSexpressionSet-methods | description of function NGSexpressionSet |
| normalize-methods | description of function normalize |
| pcorMat-methods | description of function corMat.Pvalues |
| plot.heatmaps-methods | description of function plot.heatmaps |
| plot_histogram-methods | description of function plot_histograms |
| plot.legend-methods | description of function plot.legend |
| plot-methods | description of function plot |
| plot.probeset-methods | description of function plot.probeset |
| PMID25158935exp | Read counts for the expression data described in PMID25158935 |
| PMID25158935samples | Read counts for the sample data for the expression... |
| predict.rf | description of function predict.rf |
| preprocess-methods | description of function preprocess |
| pwd-methods | description of function pwd |
| quality_of_fit-methods | description of function quality_of_fit |
| qualityTest-methods | description of function qualityTest |
| ranks-methods | description of function ranks |
| read.bams-methods | description of function read.bams |
| reads.taken-methods | description of function reads.taken |
| red | reduced PMID25158935 dataset to a 100x15 StefansExpressionSet |
| reduce.Obj-methods | description of function reduce.Obj |
| removeBatch-methods | description of function removeBatch |
| reorder.genes-methods | description of function remove.genes |
| reorder.samples-methods | description of function remove.genes |
| restrictSamples-methods | description of function restrictSamples |
| rfCluster_col | rfCluster_col |
| rfCluster_row | rfCluster_row |
| saveObj-methods | description of function saveObj |
| sd.filter-methods | description of function sd.filter |
| set.outpath-methods | description of function set.outpath |
| show-methods | description of function show |
| simpleAnova-methods | description of function simpleAnova |
| SingleCellsNGS | SingleCellsNGS |
| SingleCellsNGS-methods | description of function SingleCellsNGS |
| StefansExpressionSet | StefansExpressionSet |
| StefansExpressionSet-methods | description of function StefansExpressionSet |
| transpose-methods | description of function t |
| update.measurements-methods | description of function update.measurements |
| write.data-methods | description of function write.data |
| writeStatTables-methods | description of function writeStatTables |
| z.score-methods | description of function z.score |
