groups.boxplot-methods: description of function groups.boxplot

In stela2502/StefansExpressionSet: StefansExpressionSet

description of function groups.boxplot

Description

This function can be used to get an overview of the different gene level groups in

an StefansExpressionSet It uses the linux montage command to merge all different boxplots

into one figure

Usage

groups.boxplot(x, groupCol = "GroupName", clusters, svg = F,
  fname = "group_", width = 800, height = 800, mar = NULL,
  Collapse = NULL, ...)

Arguments

x	the ExpresionSet object
groupCol	the column in the samples table that contains the sample grouping information
svg	create the single boxplots as svg or (default png) files
fname	the filename extension files are created by paste(x@outpath,fname,<GroupID>,"_boxplot")
Collapse	if set will lead to a collapse of the sample groups into one value per gene. Supports all collaps by options.
groupRow	the column in the annotation table hat contains the gene grouping information

stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.