plot.heatmaps-methods: description of function plot.heatmaps

In stela2502/StefansExpressionSet: StefansExpressionSet

description of function plot.heatmaps

Description

An rather ancient, but flexible heatmapping function that depends on heatmap.2 and allows for many data

selection/conversion options

Usage

plot.heatmaps(dataOBJ, groupCol = "GroupName", gene.names = NULL,
  pvalue = 1, analysis_name = NULL, Subset = NULL, collaps = NULL,
  pdf = F, ...)

Arguments

dataOBJ	the StefansExpressionSet object
groupCol	the column in the samples table to group the samples on
gene.names	the rownames(dataObj@data) level gene names
pvalue	an optional cut off value to select genes from the statistical results tables
analysis_name	the name for the outfiles
Subset	an optional list of strings matching to the gene symbols used to select genes of interest
collaps	collaps the sample groups into a single column of the heatmap using one of collaps=c('median', 'mean')

stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.