| 'bestGrouping,StefansExpressionSet-method |
Man page
|
| 'predict.rf,SingleCellsNGS-method |
Man page
|
| 'rfCluster_col,StefansExpressionSet-method |
Man page
|
| 'rfCluster_row,StefansExpressionSet-method |
Man page
|
| FromCountsObj |
Man page
|
| FromCountsObj,FromCountsObj-method |
Man page
|
| Make3D4obj |
Man page
|
| Make3D4obj,StefansExpressionSet-method |
Man page
|
| NGSexpressionSet |
Man page
Man page
|
| NGSexpressionSet,NGSexpressionSet-method |
Man page
|
| NGSexpressionSet-package |
Man page
|
| PMID25158935exp |
Man page
|
| PMID25158935samples |
Man page
|
| SingleCellsNGS |
Man page
Man page
|
| SingleCellsNGS,SingleCellsNGS-method |
Man page
|
| SingleCellsNGS-package |
Man page
|
| StefansExpressionSet |
Man page
Man page
|
| StefansExpressionSet,data.frame-method |
Man page
|
| add2usedObj |
Man page
|
| add2usedObj,add2usedObj-method |
Man page
|
| addAnnotation |
Man page
|
| addAnnotation,StefansExpressionSet-method |
Man page
|
| addCluster |
Man page
|
| addCluster,Clusters-method |
Man page
|
| addGeneColGroup |
Man page
|
| addGeneColGroup,StefansExpressionSet-method |
Man page
|
| addSampleColGroup |
Man page
|
| addSampleColGroup,StefansExpressionSet-method |
Man page
|
| add_to_stat |
Source code
|
| anayse_working_set |
Man page
|
| anayse_working_set,NGSexpressionSet-method |
Man page
|
| as_BioData |
Man page
|
| as_NGSexpressionSet |
Man page
|
| bestGrouping |
Man page
|
| check.depth |
Man page
|
| check.depth,NGSexpressionSet-method |
Man page
|
| clusters |
Man page
|
| clusters,StefansExpressionSet-method |
Man page
|
| coexprees4gene |
Man page
|
| coexprees4gene,StefansExpressionSet-method |
Man page
|
| collaps |
Man page
|
| collaps,StefansExpressionSet-method |
Man page
|
| colors_4 |
Man page
|
| colors_4,StefansExpressionSet-method |
Man page
|
| complexHeatmap |
Man page
|
| complexHeatmap,StefansExpressionSet-method |
Man page
|
| cor2cytoscape |
Man page
|
| cor2cytoscape,StefansExpressionSet-method |
Man page
|
| corMat |
Man page
|
| corMat,StefansExpressionSet-method |
Man page
|
| createRFgrouping_col |
Man page
|
| createRFgrouping_col,StefansExpressionSet-method |
Man page
|
| createRFgrouping_row |
Man page
|
| createRFgrouping_row,StefansExpressionSet-method |
Man page
|
| createStats |
Man page
|
| createStats,NGSexpressionSet-method |
Man page
|
| defineHeatmapColors |
Man page
|
| defineHeatmapColors,SingleCellsNGS-method |
Man page
|
| describe.probeset |
Man page
|
| describe.probeset,StefansExpressionSet-method |
Man page
|
| difference |
Man page
|
| difference,Clusters-method |
Man page
|
| drop.samples |
Man page
|
| drop.samples,StefansExpressionSet-method |
Man page
|
| export.data |
Man page
|
| export.data,StefansExpressionSet-method |
Man page
|
| export4GEDI |
Man page
|
| export4GEDI,StefansExpressionSet-method |
Man page
|
| force.numeric |
Man page
|
| force.numeric,StefansExpressionSet-method |
Man page
|
| forceAbsoluteUniqueSample |
Man page
|
| forceAbsoluteUniqueSample,character-method |
Man page
|
| getAnnotation4probesets |
Man page
|
| getAnnotation4probesets,StefansExpressionSet-method |
Man page
|
| getProbesetsFromStats |
Man page
|
| getProbesetsFromStats,StefansExpressionSet-method |
Man page
|
| getProbesetsFromValues |
Man page
|
| getProbesetsFromValues,StefansExpressionSet-method |
Man page
|
| get_gene_list |
Man page
|
| get_gene_list,StefansExpressionSet-method |
Man page
|
| gg.heatmap.list |
Man page
|
| gg.heatmap.list,StefansExpressionSet-method |
Man page
|
| ggplot.gene |
Man page
|
| ggplot.gene,StefansExpressionSet-method |
Man page
|
| group.hclust |
Man page
|
| group.hclust,StefansExpressionSet-method |
Man page
|
| groups.boxplot |
Man page
|
| groups.boxplot,StefansExpressionSet-method |
Man page
|
| heatmap.3 |
Source code
|
| identifyBestGrouping |
Man page
|
| identifyBestGrouping,SingleCellsNGS-method |
Man page
|
| interesting_genes |
Man page
|
| interesting_genes,SingleCellsNGS-method |
Man page
|
| loadObj |
Man page
|
| loadObj,StefansExpressionSet-method |
Man page
|
| log2 |
Man page
|
| log2,StefansExpressionSet-method |
Man page
|
| mds |
Man page
|
| mds,StefansExpressionSet-method |
Man page
|
| melt |
Man page
|
| melt,StefansExpressionSet-method |
Man page
|
| minValueExpr |
Man page
|
| minValueExpr,SingleCellsNGS-method |
Man page
|
| name_4_IDs |
Man page
|
| name_4_IDs,StefansExpressionSet-method |
Man page
|
| normalize |
Man page
Man page
Man page
Man page
|
| normalize,NGSexpressionSet-method |
Man page
|
| normalize,SingleCellsNGS-method |
Man page
|
| normalize,StefansExpressionSet-method |
Man page
Man page
|
| pcorMat |
Man page
|
| pcorMat,StefansExpressionSet-method |
Man page
|
| plot.heatmaps |
Man page
|
| plot.heatmaps,StefansExpressionSet-method |
Man page
|
| plot.legend |
Man page
|
| plot.legend,plot.legend-method |
Man page
|
| plot.probeset |
Man page
|
| plot.probeset,StefansExpressionSet-method |
Man page
|
| plot.stats.as.heatmap |
Man page
|
| plot.stats.as.heatmap,StefansExpressionSet-method |
Man page
|
| plot_histogram |
Man page
|
| plot_histogram,StefansExpressionSet-method |
Man page
|
| predict.rf |
Man page
|
| preprocess |
Man page
|
| preprocess,NGSexpressionSet-method |
Man page
|
| pwd |
Man page
|
| qualityTest |
Man page
|
| qualityTest,SingleCellsNGS-method |
Man page
|
| quality_of_fit |
Man page
|
| quality_of_fit,Clusters-method |
Man page
|
| ranks |
Man page
|
| ranks,StefansExpressionSet-method |
Man page
|
| read.bams |
Man page
|
| read.bams,NGSexpressionSet-method |
Man page
|
| reads.taken |
Man page
|
| reads.taken,NGSexpressionSet-method |
Man page
|
| red |
Man page
|
| reduce.Obj |
Man page
|
| reduce.Obj,StefansExpressionSet-method |
Man page
|
| removeBatch |
Man page
|
| removeBatch,NGSexpressionSet-method |
Man page
|
| reorder.genes |
Man page
|
| reorder.genes,StefansExpressionSet-method |
Man page
|
| reorder.samples |
Man page
|
| reorder.samples,StefansExpressionSet-method |
Man page
|
| restrictSamples |
Man page
|
| restrictSamples,StefansExpressionSet-method |
Man page
|
| rfCluster_col |
Man page
|
| rfCluster_row |
Man page
|
| saveObj |
Man page
|
| saveObj,StefansExpressionSet-method |
Man page
|
| sd.filter |
Man page
|
| sd.filter,stat_sd.filter-method |
Man page
|
| set.outpath |
Man page
|
| set.outpath,StefansExpressionSet-method |
Man page
|
| show |
Man page
|
| show,StefansExpressionSet-method |
Man page
|
| simpleAnova |
Man page
Man page
|
| simpleAnova,SingleCellsNGS-method |
Man page
|
| simpleAnova,StefansExpressionSet-method |
Man page
|
| transpose |
Man page
|
| transpose,02_transpose-method |
Man page
|
| update.measurements |
Man page
|
| update.measurements,SingleCellsNGS-method |
Man page
|
| write.data |
Man page
|
| write.data,StefansExpressionSet-method |
Man page
|
| writeStatTables |
Man page
|
| writeStatTables,StefansExpressionSet-method |
Man page
|
| z.score |
Man page
|
| z.score,StefansExpressionSet-method |
Man page
|
