plotRegi-methods: Generate relative enrichment of genomic features plot

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Generate relative enrichment of genomic features plot

Description

Generate relative enrichment of genomic features plot.

Methods

signature(object = "ChIPQCexperiment", facet=T, facetBy=c("Tissue","Factor"))

Generate relative enrichment of genomic features plots for all the samples in an experiment.

signature(object = "list",facet=T, facetBy=c("Sample"))

Generate relative enrichment of genomic features plots for all the samples in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample")

Generate relative enrichment of genomic features plots for a sample.

Note

plotRegi uses ggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotRegi(exampleExp,facetBy=c("Tissue","Factor"))
plotRegi(QCsample(exampleExp,1))
data(tamoxifen_QC)
plotRegi(tamoxifen,facetBy=c("Tissue","Condition"))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.