plotCorHeatmap-methods: Generate Correlation Heatmap for ChIP samples

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Generate Correlation Heatmap for ChIP samples

Description

Generates correlation heatmap for ChIP samples.

Methods

signature(object = "ChIPQCexperiment", attributes, ...)

Generate correlation heatmap, including clustering dendrogram, for all the samples in an experiment that are associated with a peakset.

attributes	character string, or vector of character strings, representing metadata field names, for use in labeling
...	additional parameters passed to dba.plotHeatmap

Note

plotCorHeatmap uses dba.plotHeatmap for plotting.

Author(s)

Rory Stark and Thomas Carroll

See Also

ChIPQC-package, ChIPQCexperiment, dba.plotHeatmap

Examples

data(tamoxifen_QC)
plotCorHeatmap(tamoxifen,attributes=c("Tissue","Condition","Replicate"))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.