plotFrip-methods: Generate fraction of reads in peaks plot

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Generate fraction of reads in peaks plot

Description

Generate fraction of reads in peaks plot.

Methods

signature(object = "ChIPQCexperiment", type="barstacked",facet=T, facetBy=c("Tissue","Factor"),AsPercent=TRUE)

Generate fraction of reads in peaks plots for all the samples in an experiment.

signature(object = "list", type="barstacked",facet=T, facetBy=c("Sample"),AsPercent=TRUE)

Generate fraction of reads in peaks plots for all the samples in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample",type="barstacked",facet=T, facetBy=c("Tissue","Factor"),AsPercent=TRUE)

Generate fraction of reads in peaks plots for a sample.

Note

plotFrip usesggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotFrip(exampleExp)
plotFrip(QCsample(exampleExp,1))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.