mapped-methods: Retrieve numbers of mapped reads

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Retrieve numbers of mapped reads

Description

Retrieve the numbers of mapped reads.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of the numbers of mapped (aligned) reads for each sample in an experiment.

signature(object = "list")

Retrieve a vector of the numbers of mapped (aligned) reads for each sample in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample")

Retrieve the number of mapped (aligned) reads in a sample.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
mapped(exampleExp)
mapped(QCsample(exampleExp,1))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.