tis_set: List of tissues that support a given region in the brain plot

In saralinker/brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment

Description

Tissues that support brain area. Opposite=tis_in_region()'

Usage

tis_set(composite, area.name, slice)

Arguments

composite	object returned from SpatialEnrichment or CreateBrain
area.name	abreviation of the brain area of interest.
slice	section of the brain to query (1-10)

Value

all areas supported by the tissue

Examples

#brainImageR:::loadworkspace()
##Load in a gene set
data(vth)
##calculate spatial enrichment
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
#get the set of tissues that are present within a given region
#tis_set(composite, area.name = "Pu", slice = 6)

saralinker/brainImageR documentation built on May 29, 2019, 1:51 p.m.