GetGenes: GenGenes
In saralinker/brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment
Description
Usage
Arguments
Value
Examples
Description
GetGenes returns the genes that are expressed within a given tissue
Usage
1
Arguments
genes
Query gene list.
composite
Result from SpatialEnrichment
tissue_abrev
The tissue of interest.
Value
Gene overlap between query and tissue of interest
Examples
1
2
3
4
5
6
7
8
#brainImageR:::loadworkspace()
##First put together a gene list, or load in the default vth dataset
data(vth)
##Calculate the spatial enrichment.
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
##Ask which genes are present in any given tissue.
#available_areanames(composite, slice = 4)
#vth_in_VZ <- GetGenes(vth, composite, tissue_abrev = "VZ")
saralinker/brainImageR documentation built on May 29, 2019, 1:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
GetGenes returns the genes that are expressed within a given tissue
Usage
1 |
Arguments
genes |
Query gene list. |
composite |
Result from SpatialEnrichment |
tissue_abrev |
The tissue of interest. |
Value
Gene overlap between query and tissue of interest
Examples
1 2 3 4 5 6 7 8 | #brainImageR:::loadworkspace()
##First put together a gene list, or load in the default vth dataset
data(vth)
##Calculate the spatial enrichment.
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
##Ask which genes are present in any given tissue.
#available_areanames(composite, slice = 4)
#vth_in_VZ <- GetGenes(vth, composite, tissue_abrev = "VZ")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.