TissueSummary: Internal-Identify the number of genes expressed in each...

In saralinker/brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment

Description

. Quantifies the presence of gene list within each tissue

Usage

TissueSummary(genes, refset = c("developing", "adult"))

Arguments

genes	Genes to query for tissue location
refset	reference map. developing (default) or adult

Value

returns genes counts for each tissue

Examples

#Internal to brainImageR, used within SpatialEnrichment
#First load in a gene set
#brainImageR:::loadworkspace()
data(vth)
#tissueExp <- TissueSummary(vth, refset = "developing")

saralinker/brainImageR documentation built on May 29, 2019, 1:51 p.m.