predict_time: Predict developmental time from gene expression data

In saralinker/brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment

Description

Predict human developmental time from expression dataset

Usage

predict_time(dat = NULL, genelist = NULL, minage = 8,
  maxage = 2120, tissue = NULL, minrsq = 0.6)

Arguments

dat	Normalized expression matrix
genelist	Optional: restrict analysis to gene list
minage	min pcw of the reference set. default = 8
maxage	max pcw of the reference set. default = 2120
tissue	Optional: restrict analysis to tissue (available)
minrsq	(range 0-1) model leniency. default = 0.5.

Value

spatiotemporal predictions.

Examples

#brainImageR:::loadworkspace()
##Load in the data
data(dat)
##predict time
#time <- predict_time(dat)

saralinker/brainImageR documentation built on May 29, 2019, 1:51 p.m.