SpatialEnrichment: Calculate the presence of your gene set within each brain...

In saralinker/brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment

Description

Calculates the presence of gene set within each region

Usage

SpatialEnrichment(genes, background = NULL, reps = 10,
  refset = c("developing", "adult"))

Arguments

genes	query gene set
background	background gene list, default = NULL (uses all ABA genes)
reps	replicates for bootstrap, default = 10
refset	reference brain map. developing (default) or adult

Value

"Comp" object

Examples

#brainImageR:::loadworkspace()
##First load in a gene set
data(vth)
##Then calculate the spatial enrichment
#composite <- SpatialEnrichment(vth,20,"developing")

saralinker/brainImageR documentation built on May 29, 2019, 1:51 p.m.