plotGSEA: Visualization of GSEA Result from 'fgsea::fgsea()'

In easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit

Visualization of GSEA Result from fgsea::fgsea()

Description

The plotGSEA function visualizes the results of a GSEA (Gene Set Enrichment Analysis) using data from the fgsea package. It generates a composite plot that includes an enrichment plot and a ranked metric plot.

Usage

plotGSEA(fgseaRes, pathways, pwayname, stats, save = FALSE)

Arguments

fgseaRes	A data table containing the GSEA results from the fgsea package.
pathways	A list of all pathways used in the GSEA analysis.
pwayname	The name of the pathway to visualize.
stats	A numeric vector representing the ranked statistics.
save	A logical value indicating whether to save the plot as a PDF file. Default is FALSE.

Value

ggplot2 object.

easybio documentation built on Sept. 17, 2024, 1:08 a.m.