plotEnrichment2: Plot Enrichment for a Specific Pathway in fgsea
In easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
plotEnrichment2 R Documentation
Plot Enrichment for a Specific Pathway in fgsea
Description
This function creates a plot of enrichment scores for a specified pathway.
It provides a visual representation of the enrichment
score (ES) along with the ranks and ticks indicating the GSEA walk length.
Usage
plotEnrichment2(pathways, pwayname, stats, gseaParam = 1, ticksSize = 0.2)
Arguments
pathways
A list of pathways.
pwayname
The name of the pathway for which to plot enrichment.
stats
A rank vector obtained from the 'fgsea' package.
gseaParam
The GSEA walk length parameter. Default is 1.
ticksSize
The size of the tick marks. Default is 0.2.
Value
A ggplot object representing the enrichment plot.
easybio documentation built on Sept. 17, 2024, 1:08 a.m.
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| plotEnrichment2 | R Documentation |
Plot Enrichment for a Specific Pathway in fgsea
Description
This function creates a plot of enrichment scores for a specified pathway. It provides a visual representation of the enrichment score (ES) along with the ranks and ticks indicating the GSEA walk length.
Usage
plotEnrichment2(pathways, pwayname, stats, gseaParam = 1, ticksSize = 0.2)
Arguments
pathways |
A list of pathways. |
pwayname |
The name of the pathway for which to plot enrichment. |
stats |
A rank vector obtained from the 'fgsea' package. |
gseaParam |
The GSEA walk length parameter. Default is 1. |
ticksSize |
The size of the tick marks. Default is 0.2. |
Value
A ggplot object representing the enrichment plot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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