dprocess_dgeList: Filter Low-Expressed Genes and Normalize DGEList Data

In easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit

Filter Low-Expressed Genes and Normalize DGEList Data

Description

This function filters out low-expressed genes from a DGEList object and normalizes the count data. It also provides diagnostic plots for raw and filtered data.

Usage

dprocess_dgeList(x, group.column, min.count = 10)

Arguments

x	A DGEList object containing raw count data.
group.column	The name of the column in x$samples that contains the grouping information for the samples.
min.count	The minimum number of counts required for a gene to be considered expressed. Genes with counts below this threshold in any group will be filtered out. Defaults to 10.

Value

The function returns a DGEList object with low-expressed genes filtered out and normalization factors calculated.

easybio documentation built on Sept. 17, 2024, 1:08 a.m.