dgeList: Construct a DGEList Object

In easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit

Construct a DGEList Object

Description

This function creates a DGEList object from a count matrix, sample information, and feature information. It is designed to facilitate the analysis of differential gene expression using the edgeR package.

Usage

dgeList(count, sample.info, feature.info)

Arguments

count	A numeric matrix where rows represent features (e.g., genes) and columns represent samples. Row names should correspond to feature identifiers, and column names should correspond to sample identifiers.
sample.info	A data frame containing information about the samples. The number of rows should match the number of columns in the count matrix.
feature.info	A data frame containing information about the features. The number of rows should match the number of rows in the count matrix.

Value

A DGEList object as defined by the edgeR package, which includes the count data, sample information, and feature information.

easybio documentation built on Sept. 17, 2024, 1:08 a.m.