| Artist | Visualization Artist for Custom Plots |
| check_marker | Verify Markers for Specific Clusters Using matchCellMarker |
| CHOL_DEGs | Example DEGs data from Limma-Voom workflow for TCGA-CHOL... |
| dgeList | Construct a DGEList Object |
| dprocess_dgeList | Filter Low-Expressed Genes and Normalize DGEList Data |
| finsert | Insert Specific Values into a Character Vector at Defined... |
| get_attr | Retrieve Attributes from an R Object |
| get_marker | Retrieve Markers for Specific Cells from cellMarker2 |
| groupStat | Perform Summary Analysis by Group Using Regular Expressions |
| groupStatI | Perform Summary Analysis by Group Using an Index |
| limmaFit | Fit a Linear Model for RNA-seq data using limma |
| list2dt | Convert a List with Vector Values to a Long Data.table |
| list2graph | Convert a Named List into a Graph Based on Overlap |
| matchCellMarker2 | Match Markers with cellMarker2 Dataset |
| pbmc.markers | Example marker data from Seurat::FindAllMarkers() |
| plotEnrichment2 | Plot Enrichment for a Specific Pathway in fgsea |
| plotGSEA | Visualization of GSEA Result from 'fgsea::fgsea()' |
| plotMarkerDistribution | Plot Distribution of a Marker Across Tissues and Cell Types |
| plotORA | Visualization of ORA Test Results |
| plotPossibleCell | Plot Possible Cell Distribution Based on matchCellMarker2()... |
| plotRank | Visualization of GSEA Rank Statistics |
| plotSeuratDot | Create Dot Plots for Markers from check_marker |
| plotVolcano | Plot Volcano Plot for Differentially Expressed Genes |
| prepare_geo | Download and Process GEO Data |
| prepare_tcga | Prepare TCGA Data for Analysis |
| setcolnames | Rename Column Names of a Data Frame or Matrix |
| setrownames | Rename Row Names of a Data Frame or Matrix |
| setSavedir | Set a Directory for Saving Files |
| split_matrix | Split a Matrix into Smaller Submatrices by Column |
| theme_publication | Custom ggplot2 Theme for Academic Publications |
| tuneParameters | Optimize Resolution and Gene Number Parameters for Cell Type... |
| uniprot_id_map | Map UniProt IDs to Other Identifiers |
| workIn | Perform Operations in a Specified Directory and Return to the... |
