Files in SuperCell

Simplification of scRNA-Seq Data by Merging Together Similar Cells

README.md R/supercell_estimate_velocity.R R/singlecell_mixing.R R/supercell_merge.R R/SCimplify_for_velocity.R R/build_knn_graph.R R/SCimplify.R R/supercell_prcomp.R R/supercell_cluster.R R/data.R R/conversion.R R/supercell_GE.R R/supercell_GeneGenePlot.R R/supercell_plot_GE.R R/supercell_FindAllMarkers.R R/supercell_assign.R R/supercell_2_sce.R R/supercell_tSNE.R R/supercell_silhouette.R R/supercell_2_Seurat.R R/supercell_rescale.R R/supercell_purity.R R/supercell_UMAP.R R/supercell_plot.R R/supercell_VlnPlot.R inst/doc/a_SuperCell.Rmd inst/doc/b_Combined_vs_independent_sample_processing.R inst/doc/a_SuperCell.R inst/doc/b_Combined_vs_independent_sample_processing.Rmd tests/testthat.R tests/testthat/test_data_load_and_manipulations.R vignettes/a_SuperCell.Rmd vignettes/b_Combined_vs_independent_sample_processing.Rmd man/supercell_FindAllMarkers.Rd man/supercell_plot_tSNE.Rd man/supercell_tSNE.Rd man/build_knn_graph.Rd man/supercell_GE_idx.Rd man/supercell_silhouette.Rd man/supercell_plot_GE.Rd man/SCimplify.Rd man/supercell_GeneGenePlot_single.Rd man/sc_mixing_score.Rd man/supercell_DimPlot.Rd man/supercell_prcomp.Rd man/supercell_UMAP.Rd man/supercell_VlnPlot.Rd man/supercell_VlnPlot_single.Rd man/supercell_2_sce.Rd man/supercell_merge.Rd man/SCimplify_for_velocity.Rd man/supercell_plot.Rd man/supercell_cluster.Rd man/supercell_assign.Rd man/build_knn_graph_nn2.Rd man/metacell2_anndata_2_supercell.Rd man/cell_lines.Rd man/supercell_mergeGE.Rd man/supercell_GE.Rd man/supercell_FindMarkers.Rd man/knn_graph_from_dist.Rd man/supercell_plot_UMAP.Rd man/supercell_GeneGenePlot.Rd man/supercell_2_Seurat.Rd man/supercell_rescale.Rd man/SCimplify_from_embedding.Rd man/anndata_2_supercell.Rd man/supercell_estimate_velocity.Rd man/supercell_purity.Rd