anndata_2_supercell: Convert Anndata metacell object (Metacell-2 or SEACells) to...

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Convert Anndata metacell object (Metacell-2 or SEACells) to Super-cell like object

Description

Convert Anndata metacell object (Metacell-2 or SEACells) to Super-cell like object

Usage

anndata_2_supercell(adata, simplification.algo = "unknown")

Arguments

adata	anndata object of metacells (for example, the output of collect_metacells() for Metacells or the output of SEACells.core.summarize_by_SEACell) Please, **make sure**, adata has ‘uns[’sc.obs']' field containing observation information of single-cell data, in particular, a column 'membership' (single-cell assignemnt to metacells)
simplification.algo	metacell construction algorithm (i.e., Metacell2 or SEACells)

Value

a list of super-cell like object (similar to the output of SCimplify)

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.