Trena-class: Define an object of class Trena
In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning
Description
Usage
Arguments
Value
See Also
Examples
Description
The Trena class provides a convenient wrapper for the most commonly used filters and solvers in the trena
package. Given a particular genome (one of c("hg38","mm10"), the Trena class provides methods to
retrieve information about possible regulators for a target gene, assess the effects of SNPs, and create gene models
using the flexible EnsembleSolver class.
Usage
1
Arguments
genomeName
A string indicating the genome used by the Trena object. Currently, only human and mouse (
"hg38","mm10") are supported
quiet
A logical indicating whether or not the Trena object should print output
Value
An object of the Trena class
See Also
getRegulatoryChromosomalRegions, getRegulatoryTableColumnNames,
getGeneModelTableColumnNames,
createGeneModelFromRegulatoryRegions,
createGeneModelFromTfList
Examples
1
2
# Create a Trena object using the human hg38 genome
trena <- Trena("hg38")
trena documentation built on Nov. 15, 2020, 2:07 a.m.
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Description Usage Arguments Value See Also Examples
Description
The Trena class provides a convenient wrapper for the most commonly used filters and solvers in the trena
package. Given a particular genome (one of c("hg38","mm10"), the Trena class provides methods to
retrieve information about possible regulators for a target gene, assess the effects of SNPs, and create gene models
using the flexible EnsembleSolver class.
Usage
1 |
Arguments
genomeName |
A string indicating the genome used by the Trena object. Currently, only human and mouse ( "hg38","mm10") are supported |
quiet |
A logical indicating whether or not the Trena object should print output |
Value
An object of the Trena class
See Also
getRegulatoryChromosomalRegions, getRegulatoryTableColumnNames,
getGeneModelTableColumnNames,
createGeneModelFromRegulatoryRegions,
createGeneModelFromTfList
Examples
1 2 | # Create a Trena object using the human hg38 genome
trena <- Trena("hg38")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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