closeDatabaseConnections: Close a Footprint Database Connection
In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Description Usage Arguments Value See Also

This method takes a FootprintFinder object and closes connections to the footprint databases if they are currently open.

1 2	## S4 method for signature 'FootprintFinder' closeDatabaseConnections(obj)

obj

An object of class FootprintFinder

Closes the specified database connection

Other FootprintFinder methods: FootprintFinder-class, getChromLoc,FootprintFinder-method, getFootprintsForGene,FootprintFinder-method, getFootprintsInRegion,FootprintFinder-method, getGenePromoterRegion,FootprintFinder-method, getGtfGeneBioTypes,FootprintFinder-method, getGtfMoleculeTypes,FootprintFinder-method, getPromoterRegionsAllGenes,FootprintFinder-method

trena documentation built on Nov. 15, 2020, 2:07 a.m.

trena index

Package overview README.md A Brief Introduction to TReNA An example Knitr/R Markdown document Case Study Four: a novel regulator of GATA2 in erythropoieis? Case Study One: attempt to reproduce known regulation of NFE2 by GATA1 in bulk RNA-seq Case Study Three attempt to reproduce known regulation of NFE2 by GATA1 in bulk RNA-seq Case Study Two reproduces known regulation of NFE2 by GATA1 in erytrhopoiesis RNA-seq Knitr/R Markdown: explore output controls TRENA: computational prediction of gene regulation

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