addStatsSimple: add PCA-based summary stats on all TFs in the model
In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning
Description
Usage
Arguments
Value
Description
add PCA-based summary stats on all TFs in the model
Usage
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## S4 method for signature 'PCAMax'
addStatsSimple(
obj,
varianceToInclude = 0.75,
scalePCA = FALSE,
excludeLasso = TRUE,
quiet = TRUE
)
Arguments
obj
An object of the class PCAMax
varianceToInclude
numeric variance to include in the PCA
scalePCA
logical
excludeLasso
logical excluding lasso avoids dropping TFs due to shrinkage
quiet
logical
Value
the original model with extra columns: pcaMax, cov, PC1, PC2,
trena documentation built on Nov. 15, 2020, 2:07 a.m.
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Description Usage Arguments Value
Description
add PCA-based summary stats on all TFs in the model
Usage
1 2 3 4 5 6 7 8 | ## S4 method for signature 'PCAMax'
addStatsSimple(
obj,
varianceToInclude = 0.75,
scalePCA = FALSE,
excludeLasso = TRUE,
quiet = TRUE
)
|
Arguments
obj |
An object of the class PCAMax |
varianceToInclude |
numeric variance to include in the PCA |
scalePCA |
logical |
excludeLasso |
logical excluding lasso avoids dropping TFs due to shrinkage |
quiet |
logical |
Value
the original model with extra columns: pcaMax, cov, PC1, PC2,
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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