getCandidates-GeneOntologyFilter-method: Get candidate genes using a gene ontology filter

In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Description

Get candidate genes using a gene ontology filter

Usage

## S4 method for signature 'GeneOntologyFilter'
getCandidates(obj)

Arguments

obj	An object of class GeneOntologyFilter

Value

A list, where one element a character vector of transcription factors that match the GO term and the other is an empty data frame.

See Also

GeneOntologyFilter

Other getCandidate Methods: getCandidates,FootprintFilter-method, getCandidates,HumanDHSFilter-method, getCandidates,VarianceFilter-method, getCandidates()

Examples

# Make a filter for "transcription, DNA-templated" and use it to filter candidates
library(org.Hs.eg.db)
goFilter <- GeneOntologyFilter(org.Hs.eg.db, GOTerm="GO:0006351")
candidates <- getCandidates(goFilter)

trena documentation built on Nov. 15, 2020, 2:07 a.m.