addStats: add PCA-based summary stats on all TFs in the model
In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Description Usage Arguments Value

add PCA-based summary stats on all TFs in the model

1 2	## S4 method for signature 'PCAMax' addStats(obj, varianceToInclude = 0.75, scalePCA = FALSE)

`obj`	An object of the class PCAMax
`varianceToInclude`	numeric variance to include in the PCA
`scalePCA`	logical

the original model with extra columns: pcaMax, cov, PC1, PC2,

trena documentation built on Nov. 15, 2020, 2:07 a.m.

trena index

Package overview README.md A Brief Introduction to TReNA An example Knitr/R Markdown document Case Study Four: a novel regulator of GATA2 in erythropoieis? Case Study One: attempt to reproduce known regulation of NFE2 by GATA1 in bulk RNA-seq Case Study Three attempt to reproduce known regulation of NFE2 by GATA1 in bulk RNA-seq Case Study Two reproduces known regulation of NFE2 by GATA1 in erytrhopoiesis RNA-seq Knitr/R Markdown: explore output controls TRENA: computational prediction of gene regulation

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