getSolverNames: Retrieve the solver names from an EnsembleSolver object
In trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning
Description
Usage
Arguments
Value
Examples
Description
Retrieve the solver names from an EnsembleSolver object
Usage
1
2
## S4 method for signature 'EnsembleSolver'
getSolverNames(obj)
Arguments
obj
An object of class Solver
Value
The vector of solver names associated with an EnsembleSolver object
Examples
1
2
3
4
5
6
7
# Create a Solver object using the included Alzheimer's data and retrieve the regulators
load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
targetGene <- "MEF2C"
candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
solver <- EnsembleSolver(mtx.sub, targetGene, candidateRegulators,
solverNames = c("lasso","randomForest"))
solver.names <- getSolverNames(solver)
trena documentation built on Nov. 15, 2020, 2:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Retrieve the solver names from an EnsembleSolver object
Usage
1 2 | ## S4 method for signature 'EnsembleSolver'
getSolverNames(obj)
|
Arguments
obj |
An object of class Solver |
Value
The vector of solver names associated with an EnsembleSolver object
Examples
1 2 3 4 5 6 7 | # Create a Solver object using the included Alzheimer's data and retrieve the regulators
load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
targetGene <- "MEF2C"
candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
solver <- EnsembleSolver(mtx.sub, targetGene, candidateRegulators,
solverNames = c("lasso","randomForest"))
solver.names <- getSolverNames(solver)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.