reportGenotypeSegmentation: plot genomic view

In beadarraySNP: Normalization and reporting of Illumina SNP bead arrays

Description

Create a figure that can be used for interactive work

Usage

reportGenotypeSegmentation(object, plotRaw = TRUE, subsample = NULL, panels = 0, minProbes = 10, maxY = 2, ...)

Arguments

object	class SnpSetIllumina after segmentation
plotRaw	logical
subsample	factor
panels	number of panels on a page
minProbes	minimum number of probes for a chromosome within a panel
maxY	maximum value on vertical scale within panels
...	arguments are forwrded to plot

Value

this function is used for its side effects

Author(s)

Jan Oosting

beadarraySNP documentation built on Nov. 8, 2020, 7:21 p.m.