alterCN: alterCN
In beadarraySNP: Normalization and reporting of Illumina SNP bead arrays

Description Usage Arguments Details Value Author(s) See Also

View source: R/SnpSetIlluminaInteractive.R

Changes one of the levels of a cn.sum data structure

1	alterCN(cn.sum, opa, value, updown)

`cn.sum`	cn.sum structure to change
`opa`	opa panel within the structure
`value`	the predicted value to change
`updown`	the value has a higher (TRUE) or lower (FALSE) cn value

The state in the cn.sum structure that has a predicted value of value will have it's associated associated inferred copy number increased ( updown is TRUE) or decreased (updown is FALSE). The function makes sure that the copynumber values within a OPA panel have the same order as the predicted values.

a new cn.sum data structure

Jan Oosting

interactiveCNselect, createCNSummary, setRealCN

beadarraySNP documentation built on Nov. 8, 2020, 7:21 p.m.