pdfChromosomesSmoothCopyNumber: reportWrappers
In beadarraySNP: Normalization and reporting of Illumina SNP bead arrays

Description Usage Arguments Details Value Author(s) See Also Examples

Functions that help create pdf reports

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pdfChromosomesSmoothCopyNumber(object, filename, ...)
pdfSamplesSmoothCopyNumber(object, filename, ...)
pdfChromosomeGainLossLOH(object, filename, ...)

`object`	SnpSetIllumina object
`filename`	filename of output pdf file
`...`	arguments for report functions

These functions set up and perfom reporting to pdf files.

This function is used for its side effects

Jan Oosting

reportChromosomesSmoothCopyNumber, reportSamplesSmoothCopyNumber, reportChromosomeGainLossLOH

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  ## Not run: data(chr17.260)
  ## Not run: data.nrm<-standardNormalization(chr17.260)
  ## Not run: pdfChromosomesSmoothCopyNumber(data.nrm, "Chr17.pdf", grouping=pData(data.nrm)$Group,smooth.lambda=4)

beadarraySNP documentation built on Nov. 8, 2020, 7:21 p.m.