d_zibb_6: Simulated Ig gene usage data

In snaketron/IgGeneUsage: Differential gene usage in immune repertoires

Simulated Ig gene usage data

Description

A small example of paired-sample *with replicates* IRRs with these features:

• 3 conditions

• 9 individuals with one IRRs per condition

• 10 Ig genes

• 4 replicates per individual

This dataset was simulated from zero-inflated beta-binomial (ZIBB) distribution. Simulation code is available in inst/scripts/d_zibb_6.R

Usage

data("d_zibb_6", package = "IgGeneUsage")

Format

A data frame with columns:

• "individual_id"

• "condition"

• "gene_name"

• "replicate"

• "gene_name_count"

This format is accepted by IgGeneUsage.

Source

Simulation code is provided in inst/scripts/d_zibb_6.R

Examples

data("d_zibb_6", package = "IgGeneUsage")
head(d_zibb_6)

snaketron/IgGeneUsage documentation built on April 23, 2024, 2:22 a.m.