d_zibb_2: Simulated Ig gene usage data

In snaketron/IgGeneUsage: Differential gene usage in immune repertoires

Simulated Ig gene usage data

Description

A small example dataset that has the following features:

• 1 conditions

• 5 individuals (samples)

• 3 biological replicates per individual

• 15 Ig genes

This dataset was simulated from zero-inflated beta-binomial (ZIBB) distribution. Simulation code is available in inst/scripts/d_zibb_2.R

Usage

data("d_zibb_2", package = "IgGeneUsage")

Format

A data frame with columns:

• "individual_id"

• "condition"

• "gene_name"

• "replicate"

• "gene_name_count"

This format is accepted by IgGeneUsage.

Source

Simulation code is provided in inst/scripts/d_zibb_2.R

Examples

data("d_zibb_2", package = "IgGeneUsage")
head(d_zibb_2)

snaketron/IgGeneUsage documentation built on April 23, 2024, 2:22 a.m.