Files in montilab/K2Taxonomer

Creating annotated submodules of high-throughput data through recursive partitioning

R/AllClasses.R R/AllGenerics.R R/K2dashboard.R R/K2dendro.R R/K2filterGenes.R R/K2preproc.R R/K2tax.R R/K2visNetwork.R R/aggregateGeneSetScores.R R/cKmeansDownsampleSmallest.R R/cKmeansDownsampleSqrt.R R/checkK2.R R/data.R R/dgeWrapper.R R/doSplit.R R/fixFDR.R R/formatCov.R R/formatInfo.R R/getDGEInter.R R/getDGETable.R R/getEnrichmentInter.R R/getEnrichmentTable.R R/getGenePathways.R R/hclustWrapper.R R/isK2.R R/limmaTable.R R/mastTable.R R/plotGenePathway.R R/runDGEmods.R R/runDSSEmods.R R/runFISHERmods.R R/runScoreGeneSets.R R/signatureWrapper.R R/signatureWrapper_MAST.R README.md inst/dashboard/DashHelper.R inst/dashboard/K2Dashboard.Rmd inst/dashboard/about.md man/K2colData.Rd man/K2dashboard.Rd man/K2data.Rd man/K2dendro.Rd man/K2eMat.Rd man/K2eMatDS.Rd man/K2gMat.Rd man/K2gene2Pathway.Rd man/K2geneURL.Rd man/K2genesetURL.Rd man/K2genesets.Rd man/K2meta.Rd man/K2preproc.Rd man/K2res.Rd man/K2results.Rd man/K2tax.Rd man/K2visNetwork.Rd man/aggregateGeneSetScores.Rd man/cKmeansDownsampleSmallest.Rd man/cKmeansDownsampleSqrt.Rd man/getDGEInter.Rd man/getDGETable.Rd man/getEnrichmentInter.Rd man/getEnrichmentTable.Rd man/getGenePathways.Rd man/hclustWrapper.Rd man/matrixORdgCMatrix-class.Rd man/plotGenePathway.Rd man/runDGEmods.Rd man/runDSSEmods.Rd man/runFISHERmods.Rd man/runScoreGeneSets.Rd vignettes/01_K2Taxonomer_singlecell.Rmd vignettes/02_K2Taxonomer_bulk.Rmd vignettes/03_K2Taxonomer_dashboard.Rmd