runDSSEmods: Perform differential analysis of enrichment scores between...
In montilab/K2Taxonomer: Creating annotated submodules of high-throughput data through recursive partitioning
runDSSEmods R Documentation
Perform differential analysis of enrichment scores between subgroups at each
partition
Description
Adds differential analysis results of single-sample enrichment scores
to to the output of K2tax().
Usage
runDSSEmods(K2res, vehicle = NULL, variables = NULL, block = NULL)
Arguments
vehicle
The value in the cohort variable that contains the ID of observation to use as control. Default NULL if no vehicle to be used.
variables
Character. Columns in meta data of 'object' to control for in differential analyses.
block
Character. Block parameter in limma for modeling higherarchical data structure, such as multiple observations per individual.
Value
An object of class K2.
References
\insertRefreed_2020K2Taxonomer
\insertReflimmaK2Taxonomer
\insertRefbhK2Taxonomer
\insertRefgsvaK2Taxonomer
montilab/K2Taxonomer documentation built on April 5, 2025, 3:58 a.m.
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| runDSSEmods | R Documentation |
Perform differential analysis of enrichment scores between subgroups at each partition
Description
Adds differential analysis results of single-sample enrichment scores to to the output of K2tax().
Usage
runDSSEmods(K2res, vehicle = NULL, variables = NULL, block = NULL)
Arguments
vehicle |
The value in the cohort variable that contains the ID of observation to use as control. Default NULL if no vehicle to be used. |
variables |
Character. Columns in meta data of 'object' to control for in differential analyses. |
block |
Character. Block parameter in limma for modeling higherarchical data structure, such as multiple observations per individual. |
Value
An object of class K2.
References
\insertRefreed_2020K2Taxonomer \insertReflimmaK2Taxonomer \insertRefbhK2Taxonomer \insertRefgsvaK2Taxonomer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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