getBinsStartsEnds: Get genomic positions of bins

In macintyrelab/CNpare: Comparing tumour copy number profiles

Get genomic positions of bins

Description

This function split genome into evenly sized bins

Usage

getBinsStartsEnds(window = 5e+05, chr, lengthChr)

Arguments

window	numeric variable with the bin size. Default is 500kb
chr	character variable with the chromosome name
lengthChr	numeric variable with the chromosome length

Value

list with genomic positions of each bin

Examples

posBins <- lapply(seq_len(22),function(chr)
    getBinsStartsEnds(window=500000, chr, lengthChr[chr]))

macintyrelab/CNpare documentation built on April 15, 2022, 4:46 a.m.