generateSampleByComponentMatrix: Get components per sample

In macintyrelab/CNpare: Comparing tumour copy number profiles

Get components per sample

Description

This function get components per sample. Approach developed by Geoff Macintyre et al. 2018

Usage

generateSampleByComponentMatrix(
  CN_features,
  all_components = NULL,
  cores = 1,
  rowIter = 1000,
  subcores = 2
)

Arguments

CN_features	list with features per sample
all_components	components of copy-number signatures to obtain
cores	number of cores to use. Default is 1
rowIter	iterations for calculation of sum of posteriors
subcores	number of subcores to use. Default is 2

Value

A matrix with components per sample

Examples

## Not run: 
profiles< getProfiles(segcn=cells_segcn,
    samples=unique(cells_segcn$sample)[1:4])
CN_features<-extractCopynumberFeatures(profiles)
sample_by_component<-generateSampleByComponentMatrix(CN_features,
    all_components=component_parameters)

## End(Not run)

macintyrelab/CNpare documentation built on April 15, 2022, 4:46 a.m.