Files in cytoscape/RCy3
Functions to Access and Control Cytoscape

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/Annotations.R R/Apps.R R/Collections.R R/Commands.R R/CyNDEx.R R/CytoscapeSystem.R R/Filters.R R/Groups.R R/Layouts.R R/NetworkSelection.R R/NetworkViews.R R/Networks.R R/Notebook.R R/RCy3-deprecated.R R/RCy3-notebook.R R/RCy3-sandbox.R R/RCy3-utils.R R/RCy3.R R/Sandbox.R R/Session.R R/StyleBypasses.R R/StyleDefaults.R R/StyleDependencies.R R/StyleMappings.R R/StyleValues.R R/Styles.R R/Tables.R R/Tools.R R/UserInterface.R

RCy3.Rproj

README.md

docs/404.html

docs/LICENSE-text.html

docs/articles/Cancer-networks-and-data.html

docs/articles/Cancer-networks-and-data_files/header-attrs-2.8/header-attrs.js

docs/articles/Custom-Graphics.html

docs/articles/Custom-Graphics_files/header-attrs-2.8/header-attrs.js

docs/articles/Cytoscape-and-NDEx.html

docs/articles/Cytoscape-and-NDEx_files/header-attrs-2.8/header-attrs.js

docs/articles/Cytoscape-and-graphNEL.html

docs/articles/Cytoscape-and-graphNEL_files/header-attrs-2.8/header-attrs.js

docs/articles/Cytoscape-and-iGraph.html

docs/articles/Cytoscape-and-iGraph_files/header-attrs-2.8/header-attrs.js

docs/articles/Filtering-Networks.html

docs/articles/Filtering-Networks_files/header-attrs-2.8/header-attrs.js

docs/articles/Group-nodes.html

docs/articles/Group-nodes_files/header-attrs-2.8/header-attrs.js

docs/articles/Identifier-mapping.html

docs/articles/Identifier-mapping_files/header-attrs-2.8/header-attrs.js

docs/articles/Importing-data.html

docs/articles/Importing-data_files/header-attrs-2.8/header-attrs.js

docs/articles/Network-functions-and-visualization.html

docs/articles/Network-functions-and-visualization_files/header-attrs-2.8/header-attrs.js

docs/articles/Overview-of-RCy3.html

docs/articles/Overview-of-RCy3_files/header-attrs-2.8/header-attrs.js

docs/articles/Phylogenetic-trees.html

docs/articles/Phylogenetic-trees_files/header-attrs-2.8/header-attrs.js

docs/articles/Upgrading-existing-scripts.html

docs/articles/Upgrading-existing-scripts_files/header-attrs-2.8/header-attrs.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/AddToGroup.html

docs/reference/RCy3.html

docs/reference/RemoveFromGroup.html

docs/reference/UpdateAnnotationBoundedText.html

docs/reference/addAnnotationBoundedText.html

docs/reference/addAnnotationImage.html

docs/reference/addAnnotationShape.html

docs/reference/addAnnotationText.html

docs/reference/addCyEdges.html

docs/reference/addCyNodes.html

docs/reference/analyzeNetwork.html

docs/reference/applyFilter.html

docs/reference/bundleEdges.html

docs/reference/checkNotebookIsRunning.html

docs/reference/checkRunningRemote.html

docs/reference/clearEdgeBends.html

docs/reference/clearEdgePropertyBypass.html

docs/reference/clearNetworkCenterBypass.html

docs/reference/clearNetworkPropertyBypass.html

docs/reference/clearNetworkZoomBypass.html

docs/reference/clearNodeOpacityBypass.html

docs/reference/clearNodePropertyBypass.html

docs/reference/clearSelection.html

docs/reference/cloneNetwork.html

docs/reference/closeSession.html

docs/reference/collapseGroup.html

docs/reference/commandEcho.html

docs/reference/commandOpenDialog.html

docs/reference/commandPause.html

docs/reference/commandQuit.html

docs/reference/commandRunFile.html

docs/reference/commandSleep.html

docs/reference/commandsAPI.html

docs/reference/commandsGET.html

docs/reference/commandsHelp.html

docs/reference/commandsPOST.html

docs/reference/commandsRun.html

docs/reference/copyVisualStyle.html

docs/reference/createColumnFilter.html

docs/reference/createCompositeFilter.html

docs/reference/createDegreeFilter.html

docs/reference/createGraphFromNetwork.html

docs/reference/createGroup.html

docs/reference/createGroupByColumn.html

docs/reference/createIgraphFromNetwork.html

docs/reference/createNetworkFromDataFrames.html

docs/reference/createNetworkFromGraph.html

docs/reference/createNetworkFromIgraph.html

docs/reference/createSubnetwork.html

docs/reference/createVisualStyle.html

docs/reference/cybrowserClose.html

docs/reference/cybrowserDialog.html

docs/reference/cybrowserHide.html

docs/reference/cybrowserList.html

docs/reference/cybrowserSend.html

docs/reference/cybrowserShow.html

docs/reference/cybrowserVersion.html

docs/reference/cyrestAPI.html

docs/reference/cyrestDELETE.html

docs/reference/cyrestGET.html

docs/reference/cyrestPOST.html

docs/reference/cyrestPUT.html

docs/reference/cytoscapeApiVersions.html

docs/reference/cytoscapeFreeMemory.html

docs/reference/cytoscapeMemoryStatus.html

docs/reference/cytoscapeNumberOfCores.html

docs/reference/cytoscapePing.html

docs/reference/cytoscapeVersionInfo.html

docs/reference/deleteAllNetworks.html

docs/reference/deleteAnnotation.html

docs/reference/deleteDuplicateEdges.html

docs/reference/deleteGroup.html

docs/reference/deleteNetwork.html

docs/reference/deleteSelectedEdges.html

docs/reference/deleteSelectedNodes.html

docs/reference/deleteSelfLoops.html

docs/reference/deleteStyleMapping.html

docs/reference/deleteTableColumn.html

docs/reference/deleteVisualStyle.html

docs/reference/diffusionAdvanced.html

docs/reference/diffusionBasic.html

docs/reference/disableApp.html

docs/reference/doInitializeSandbox.html

docs/reference/doRequestRemote.html

docs/reference/doSetSandbox.html

docs/reference/dockPanel.html

docs/reference/dot-exportShowImage.html

docs/reference/dot-getDefaultSandbox.html

docs/reference/dot-getRequester.html

docs/reference/enableApp.html

docs/reference/expandGroup.html

docs/reference/exportFilters.html

docs/reference/exportImage.html

docs/reference/exportNetwork.html

docs/reference/exportNetworkToNDEx.html

docs/reference/exportVisualStyles.html

docs/reference/findRemoteCytoscape.html

docs/reference/fitContent.html

docs/reference/floatPanel.html

docs/reference/getAbsSandboxPath.html

docs/reference/getAllEdges.html

docs/reference/getAllNodes.html

docs/reference/getAllStyleMappings.html

docs/reference/getAnnotationList.html

docs/reference/getAppInformation.html

docs/reference/getAppStatus.html

docs/reference/getAppUpdates.html

docs/reference/getArrowShapes.html

docs/reference/getAvailableApps.html

docs/reference/getBackgroundColorDefault.html

docs/reference/getBrowserClientChannel.html

docs/reference/getBrowserClientJs.html

docs/reference/getCollectionList.html

docs/reference/getCollectionName.html

docs/reference/getCollectionNetworks.html

docs/reference/getCollectionSuid.html

docs/reference/getCurrentSandbox.html

docs/reference/getCurrentSandboxName.html

docs/reference/getCurrentSandboxPath.html

docs/reference/getCurrentStyle.html

docs/reference/getDefaultSandbox.html

docs/reference/getDefaultSandboxPath.html

docs/reference/getDisabledApps.html

docs/reference/getEdgeColor.html

docs/reference/getEdgeCount.html

docs/reference/getEdgeInfo.html

docs/reference/getEdgeLineStyle.html

docs/reference/getEdgeLineWidth.html

docs/reference/getEdgeProperty.html

docs/reference/getEdgeSelectionColorDefault.html

docs/reference/getEdgeTargetArrowShape.html

docs/reference/getFilterList.html

docs/reference/getFirstNeighbors.html

docs/reference/getGroupInfo.html

docs/reference/getInstalledApps.html

docs/reference/getJupyterBridgeURL.html

docs/reference/getLayoutNameMapping.html

docs/reference/getLayoutNames.html

docs/reference/getLayoutPropertyNames.html

docs/reference/getLayoutPropertyType.html

docs/reference/getLayoutPropertyValue.html

docs/reference/getLineStyles.html

docs/reference/getNetworkCenter.html

docs/reference/getNetworkCount.html

docs/reference/getNetworkList.html

docs/reference/getNetworkNDExId.html

docs/reference/getNetworkName.html

docs/reference/getNetworkProperty.html

docs/reference/getNetworkSuid.html

docs/reference/getNetworkViewSuid.html

docs/reference/getNetworkViews.html

docs/reference/getNetworkZoom.html

docs/reference/getNodeColor.html

docs/reference/getNodeCount.html

docs/reference/getNodeHeight.html

docs/reference/getNodePosition.html

docs/reference/getNodeProperty.html

docs/reference/getNodeSelectionColorDefault.html

docs/reference/getNodeShapes.html

docs/reference/getNodeSize.html

docs/reference/getNodeWidth.html

docs/reference/getNotebookIsRunning.html

docs/reference/getSandboxReinitialize.html

docs/reference/getSelectedEdgeCount.html

docs/reference/getSelectedEdges.html

docs/reference/getSelectedNodeCount.html

docs/reference/getSelectedNodes.html

docs/reference/getStyleDependencies.html

docs/reference/getStyleMapping.html

docs/reference/getTableColumnNames.html

docs/reference/getTableColumnTypes.html

docs/reference/getTableColumns.html

docs/reference/getTableValue.html

docs/reference/getUninstalledApps.html

docs/reference/getVisualPropertyDefault.html

docs/reference/getVisualPropertyNames.html

docs/reference/getVisualStyleNames.html

docs/reference/groupAnnotation.html

docs/reference/hideAllPanels.html

docs/reference/hideEdges.html

docs/reference/hideNodes.html

docs/reference/hidePanel.html

docs/reference/hideSelectedEdges.html

docs/reference/hideSelectedNodes.html

docs/reference/importFilters.html

docs/reference/importNetworkFromFile.html

docs/reference/importNetworkFromNDEx.html

docs/reference/importVisualStyles.html

docs/reference/index.html

docs/reference/installApp.html

docs/reference/invertEdgeSelection.html

docs/reference/invertNodeSelection.html

docs/reference/layoutCopycat.html

docs/reference/layoutNetwork.html

docs/reference/listGroups.html

docs/reference/loadTableData.html

docs/reference/lockNodeDimensions.html

docs/reference/makeSimpleGraph.html

docs/reference/makeSimpleIgraph.html

docs/reference/mapTableColumn.html

docs/reference/mapVisualProperty.html

docs/reference/matchArrowColorToEdge.html

docs/reference/mergeNetworks.html

docs/reference/notebookExportShowImage.html

docs/reference/notebookShowImage.html

docs/reference/openAppStore.html

docs/reference/openSession.html

docs/reference/paletteColorBrewerAccent.html

docs/reference/paletteColorBrewerBlues.html

docs/reference/paletteColorBrewerBrBG.html

docs/reference/paletteColorBrewerBuGn.html

docs/reference/paletteColorBrewerBuPu.html

docs/reference/paletteColorBrewerDark2.html

docs/reference/paletteColorBrewerGnBu.html

docs/reference/paletteColorBrewerGreens.html

docs/reference/paletteColorBrewerGreys.html

docs/reference/paletteColorBrewerOrRd.html

docs/reference/paletteColorBrewerOranges.html

docs/reference/paletteColorBrewerPRGn.html

docs/reference/paletteColorBrewerPaired.html

docs/reference/paletteColorBrewerPastel1.html

docs/reference/paletteColorBrewerPastel2.html

docs/reference/paletteColorBrewerPiYG.html

docs/reference/paletteColorBrewerPuBu.html

docs/reference/paletteColorBrewerPuBuGn.html

docs/reference/paletteColorBrewerPuOr.html

docs/reference/paletteColorBrewerPuRd.html

docs/reference/paletteColorBrewerPurples.html

docs/reference/paletteColorBrewerRdBu.html

docs/reference/paletteColorBrewerRdPu.html

docs/reference/paletteColorBrewerRdYlBu.html

docs/reference/paletteColorBrewerReds.html

docs/reference/paletteColorBrewerSet1.html

docs/reference/paletteColorBrewerSet2.html

docs/reference/paletteColorBrewerSet3.html

docs/reference/paletteColorBrewerYlGn.html

docs/reference/paletteColorBrewerYlGnBu.html

docs/reference/paletteColorBrewerYlOrBr.html

docs/reference/paletteColorBrewerYlOrRd.html

docs/reference/paletteColorRandom.html

docs/reference/removeNodeCustomGraphics.html

docs/reference/renameNetwork.html

docs/reference/renameTableColumn.html

docs/reference/resetDefaultSandbox.html

docs/reference/runningRemoteCheck.html

docs/reference/sandboxGetFileInfo.html

docs/reference/sandboxGetFrom.html

docs/reference/sandboxInitializer.html

docs/reference/sandboxRemove.html

docs/reference/sandboxRemoveFile.html

docs/reference/sandboxSendTo.html

docs/reference/sandboxSet.html

docs/reference/sandboxUrlTo.html

docs/reference/saveSession.html

docs/reference/selectAllEdges.html

docs/reference/selectAllNodes.html

docs/reference/selectEdges.html

docs/reference/selectEdgesAdjacentToSelectedNodes.html

docs/reference/selectEdgesConnectingSelectedNodes.html

docs/reference/selectFirstNeighbors.html

docs/reference/selectNodes.html

docs/reference/selectNodesConnectedBySelectedEdges.html

docs/reference/setBackgroundColorDefault.html

docs/reference/setCatchupFilterSecs.html

docs/reference/setCatchupNetworkSecs.html

docs/reference/setCurrentNetwork.html

docs/reference/setCurrentSandbox.html

docs/reference/setCurrentView.html

docs/reference/setDefaultSandbox.html

docs/reference/setDefaultSandboxPath.html

docs/reference/setEdgeColorBypass.html

docs/reference/setEdgeColorDefault.html

docs/reference/setEdgeColorMapping.html

docs/reference/setEdgeFontFaceBypass.html

docs/reference/setEdgeFontFaceDefault.html

docs/reference/setEdgeFontFaceMapping.html

docs/reference/setEdgeFontSizeBypass.html

docs/reference/setEdgeFontSizeDefault.html

docs/reference/setEdgeFontSizeMapping.html

docs/reference/setEdgeLabelBypass.html

docs/reference/setEdgeLabelColorBypass.html

docs/reference/setEdgeLabelColorDefault.html

docs/reference/setEdgeLabelColorMapping.html

docs/reference/setEdgeLabelDefault.html

docs/reference/setEdgeLabelMapping.html

docs/reference/setEdgeLabelOpacityBypass.html

docs/reference/setEdgeLabelOpacityDefault.html

docs/reference/setEdgeLabelOpacityMapping.html

docs/reference/setEdgeLineStyleBypass.html

docs/reference/setEdgeLineStyleDefault.html

docs/reference/setEdgeLineStyleMapping.html

docs/reference/setEdgeLineWidthBypass.html

docs/reference/setEdgeLineWidthDefault.html

docs/reference/setEdgeLineWidthMapping.html

docs/reference/setEdgeOpacityBypass.html

docs/reference/setEdgeOpacityDefault.html

docs/reference/setEdgeOpacityMapping.html

docs/reference/setEdgePropertyBypass.html

docs/reference/setEdgeSelectionColorDefault.html

docs/reference/setEdgeSourceArrowColorBypass.html

docs/reference/setEdgeSourceArrowColorDefault.html

docs/reference/setEdgeSourceArrowColorMapping.html

docs/reference/setEdgeSourceArrowMapping.html

docs/reference/setEdgeSourceArrowShapeBypass.html

docs/reference/setEdgeSourceArrowShapeDefault.html

docs/reference/setEdgeSourceArrowShapeMapping.html

docs/reference/setEdgeTargetArrowColorBypass.html

docs/reference/setEdgeTargetArrowColorDefault.html

docs/reference/setEdgeTargetArrowColorMapping.html

docs/reference/setEdgeTargetArrowMapping.html

docs/reference/setEdgeTargetArrowShapeBypass.html

docs/reference/setEdgeTargetArrowShapeDefault.html

docs/reference/setEdgeTargetArrowShapeMapping.html

docs/reference/setEdgeTooltipBypass.html

docs/reference/setEdgeTooltipDefault.html

docs/reference/setEdgeTooltipMapping.html

docs/reference/setLayoutProperties.html

docs/reference/setModelPropagationSecs.html

docs/reference/setNetworkCenterBypass.html

docs/reference/setNetworkPropertyBypass.html

docs/reference/setNetworkZoomBypass.html

docs/reference/setNodeBorderColorBypass.html

docs/reference/setNodeBorderColorDefault.html

docs/reference/setNodeBorderColorMapping.html

docs/reference/setNodeBorderOpacityBypass.html

docs/reference/setNodeBorderOpacityDefault.html

docs/reference/setNodeBorderOpacityMapping.html

docs/reference/setNodeBorderWidthBypass.html

docs/reference/setNodeBorderWidthDefault.html

docs/reference/setNodeBorderWidthMapping.html

docs/reference/setNodeColorBypass.html

docs/reference/setNodeColorDefault.html

docs/reference/setNodeColorMapping.html

docs/reference/setNodeComboOpacityMapping.html

docs/reference/setNodeCustomBarChart.html

docs/reference/setNodeCustomBoxChart.html

docs/reference/setNodeCustomHeatMapChart.html

docs/reference/setNodeCustomLineChart.html

docs/reference/setNodeCustomLinearGradient.html

docs/reference/setNodeCustomPieChart.html

docs/reference/setNodeCustomPosition.html

docs/reference/setNodeCustomRadialGradient.html

docs/reference/setNodeCustomRingChart.html

docs/reference/setNodeFillOpacityBypass.html

docs/reference/setNodeFillOpacityDefault.html

docs/reference/setNodeFillOpacityMapping.html

docs/reference/setNodeFontFaceBypass.html

docs/reference/setNodeFontFaceDefault.html

docs/reference/setNodeFontFaceMapping.html

docs/reference/setNodeFontSizeBypass.html

docs/reference/setNodeFontSizeDefault.html

docs/reference/setNodeFontSizeMapping.html

docs/reference/setNodeHeightBypass.html

docs/reference/setNodeHeightDefault.html

docs/reference/setNodeHeightMapping.html

docs/reference/setNodeLabelBypass.html

docs/reference/setNodeLabelColorBypass.html

docs/reference/setNodeLabelColorDefault.html

docs/reference/setNodeLabelColorMapping.html

docs/reference/setNodeLabelDefault.html

docs/reference/setNodeLabelMapping.html

docs/reference/setNodeLabelOpacityBypass.html

docs/reference/setNodeLabelOpacityDefault.html

docs/reference/setNodeLabelOpacityMapping.html

docs/reference/setNodeOpacityBypass.html

docs/reference/setNodePropertyBypass.html

docs/reference/setNodeSelectionColorDefault.html

docs/reference/setNodeShapeBypass.html

docs/reference/setNodeShapeDefault.html

docs/reference/setNodeShapeMapping.html

docs/reference/setNodeSizeBypass.html

docs/reference/setNodeSizeDefault.html

docs/reference/setNodeSizeMapping.html

docs/reference/setNodeTooltipBypass.html

docs/reference/setNodeTooltipDefault.html

docs/reference/setNodeTooltipMapping.html

docs/reference/setNodeWidthBypass.html

docs/reference/setNodeWidthDefault.html

docs/reference/setNodeWidthMapping.html

docs/reference/setNotebookIsRunning.html

docs/reference/setSandboxReinitialize.html

docs/reference/setStyleDependencies.html

docs/reference/setVisualPropertyDefault.html

docs/reference/setVisualStyle.html

docs/reference/spoofResponse-class.html

docs/reference/syncNodeCustomGraphicsSize.html

docs/reference/toggleGraphicsDetails.html

docs/reference/ungroupAnnotation.html

docs/reference/unhideAll.html

docs/reference/unhideEdges.html

docs/reference/unhideNodes.html

docs/reference/uninstallApp.html

docs/reference/updateAnnotationImage.html

docs/reference/updateAnnotationShape.html

docs/reference/updateAnnotationText.html

docs/reference/updateApp.html

docs/reference/updateGroupAnnotation.html

docs/reference/updateNetworkInNDEx.html

docs/reference/updateStyleDefaults.html

docs/reference/updateStyleMapping.html

inst/CITATION

inst/extdata/galExpData.csv

inst/extdata/galFiltered.sif

inst/extdata/lesmis.txt

inst/extdata/phage_ids_with_affiliation.tsv

inst/extdata/phylotree.newick

inst/extdata/prok_tax_from_silva.tsv

inst/extdata/tutorial-brc-expr-mean-dataset.robj

inst/extdata/tutorial-brc-mut-dataset.robj

inst/extdata/tutorial-ovc-expr-mean-dataset.robj

inst/extdata/tutorial-ovc-mut-dataset.robj

inst/extdata/virus_prok_cor_abundant.tsv

cytoscape/RCy3 documentation built on Nov. 1, 2024, 2:49 a.m.

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cytoscape/RCy3
Functions to Access and Control Cytoscape

Files in cytoscape/RCy3
Functions to Access and Control Cytoscape

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cytoscape/RCy3 Functions to Access and Control Cytoscape

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cytoscape/RCy3
Functions to Access and Control Cytoscape

Files in cytoscape/RCy3
Functions to Access and Control Cytoscape