exportNetwork: Export Network

In cytoscape/RCy3: Functions to Access and Control Cytoscape

Export Network

Description

Export a network to one of mulitple file formats

Usage

exportNetwork(
  filename = NULL,
  type = "SIF",
  network = NULL,
  base.url = .defaultBaseUrl,
  overwriteFile = TRUE
)

Arguments

filename	Full path or path relative to current working directory, in addition to the name of the file. Extension is automatically added based on the type argument. If blank, then the current network name is used.
type	File type. SIF (default), CX, cyjs, graphML, NNF, xGMML.
network	(optional) Name or SUID of a network or view. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.
overwriteFile	(optional) FALSE allows Cytoscape show a message box before overwriting the file if the file already exists; TRUE. allows Cytoscape to overwrite it without asking. Default value is TRUE.

Value

None.

Examples

exportNetwork('/path/filename','SIF')

cytoscape/RCy3 documentation built on Nov. 1, 2024, 2:49 a.m.