setEdgeSourceArrowColorMapping: Set Edge Source Arrow Color Mapping

In cytoscape/RCy3: Functions to Access and Control Cytoscape

Set Edge Source Arrow Color Mapping

Description

Map table column values to colors to set the source arrow color.

Usage

setEdgeSourceArrowColorMapping(
  table.column,
  table.column.values = NULL,
  colors = NULL,
  mapping.type = "c",
  default.color = NULL,
  style.name = NULL,
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

table.column	Name of Cytoscape table column to map values from
table.column.values	List of values from Cytoscape table to be used in mapping. Leave NULL to perform an automatic mapping to all column values.
colors	List of hex colors to map to table.column.values or a color palette function, e.g., paletteColorBrewerSet3 (without quotes). See RColorBrewer::display.brewer.all()
mapping.type	(char) continuous, discrete or passthrough (c,d,p); default is continuous
default.color	Hex color to set as default
style.name	Name of style; default is "default" style
network	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

None

Examples

setEdgeSourceArrowColorMapping('score', c(0,5), c('#FFFFFF','#FF7755'))
setEdgeSourceArrowColorMapping('score', colors=paletteColorBrewerRdBu)
setEdgeSourceArrowColorMapping('score', colors=paletteColorBrewerSet3, mapping.type='d')

cytoscape/RCy3 documentation built on Nov. 1, 2024, 2:49 a.m.