createGraphFromNetwork: createGraphFromNetwork

In cytoscape/RCy3: Functions to Access and Control Cytoscape

createGraphFromNetwork

Description

Returns the Cytoscape network as a Bioconductor graph.

Usage

createGraphFromNetwork(network = NULL, base.url = .defaultBaseUrl)

Arguments

network	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

A Bioconductor graph object.

Author(s)

Alexander Pico, Tanja Muetze, Georgi Kolishovski, Paul Shannon

Examples

cw <- CytoscapeWindow('network', graph=make_graphnel())
g <- createGraphFromNetwork()
g <- createGraphFromNetwork('myNetwork')

cytoscape/RCy3 documentation built on Nov. 1, 2024, 2:49 a.m.