setEdgeOpacityMapping: Set Edge Opacity Mapping

In cytoscape/RCy3: Functions to Access and Control Cytoscape

Set Edge Opacity Mapping

Description

Map table column values to opacities to set the edge opacity.

Usage

setEdgeOpacityMapping(
  table.column,
  table.column.values = NULL,
  opacities = NULL,
  mapping.type = "c",
  default.opacity = NULL,
  style.name = NULL,
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

table.column	Name of Cytoscape table column to map values from
table.column.values	List of values from Cytoscape table to be used in mapping. Leave NULL to perform an automatic mapping to all column values.
opacities	(integer) values between 0 and 255; 0 is invisible. A range of 50 to 255 is used by default for automatic mapping.
mapping.type	(char) continuous, discrete or passthrough (c,d,p); default is continuous
default.opacity	Opacity value to set as default for all unmapped values
style.name	Name of style; default is "default" style
network	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

None

Examples

setEdgeOpacityMapping('weight')
setEdgeOpacityMapping('weight', opacities=c(0,100))
setEdgeOpacityMapping('weight', c(1,10), c(50,255))

cytoscape/RCy3 documentation built on Nov. 1, 2024, 2:49 a.m.