reproducibilitySamplesPlot: UpSet-plot to that shows how each replicate supports binding...

In ZarnackGroup/BindingSiteFinder: Binding site defintion based on iCLIP data

UpSet-plot to that shows how each replicate supports binding sites

Description

A diagnostic function that plots the set sizes for each replicate, indicating how many binding site the specific replicate supports given its specific threshold. The function reproducibilityFilter is expected to be executed prior to calling this plot function.

Usage

reproducibilitySamplesPlot(
  object,
  nIntersections = 20,
  show.title = TRUE,
  text.size = NULL
)

Arguments

object	a BSFDataSet object
nIntersections	numeric; number of intersection to be shown
show.title	logical; if plot title should be visible
text.size	numeric; fontsize of all numbers on axis

Value

a plot of type ggplot

See Also

reproducibilityFilter, reproducibilityFilterPlot

Examples

# load clip data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))
bds = makeBindingSites(object = bds, bsSize = 9)
bds = reproducibilityFilter(bds)
reproducibilitySamplesPlot(bds)

ZarnackGroup/BindingSiteFinder documentation built on May 31, 2024, 3:29 a.m.