processingStepsFlowChart: Step-wise flowchart plot

In ZarnackGroup/BindingSiteFinder: Binding site defintion based on iCLIP data

Step-wise flowchart plot

Description

An overview plot that shows all workflow functions that were executed on the current object, with all input and output binding site numbers and major options that were used. The function can be called at any time in the analysis. Most optimal usage is after a full run of the wrapper function BSFind.

Usage

processingStepsFlowChart(object, size.all = 3)

Arguments

object	a BSFDataSet object
size.all	numeric; size of all numbers

Value

a plot of type ggplot

See Also

BSFind

Examples

# load clip data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))
load(list.files(files, pattern = ".rds$", full.names = TRUE)[1])
load(list.files(files, pattern = ".rds$", full.names = TRUE)[2])
bds = BSFind(bds, anno.genes = gns, anno.transcriptRegionList = regions,
 est.subsetChromosome = "chr22")
processingStepsFlowChart(bds)

ZarnackGroup/BindingSiteFinder documentation built on May 31, 2024, 3:29 a.m.