mergeCrosslinkDiagnosticsPlot: Plot binding site merging diagnostics
In ZarnackGroup/BindingSiteFinder: Binding site defintion based on iCLIP data
mergeCrosslinkDiagnosticsPlot R Documentation
Plot binding site merging diagnostics
Description
A diagnostic function that plots the number of regions to merge over the width
of these regions for each merging iteration calculated in
makeBindingSites. The function makeBindingSites
is expected to be executed prior to calling this plot function.
Usage
mergeCrosslinkDiagnosticsPlot(object)
Arguments
object
a BSFDataSet object
Value
a plot of type ggplot
See Also
makeBindingSites
Examples
# load clip data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))
bds = makeBindingSites(object = bds, bsSize = 9)
mergeCrosslinkDiagnosticsPlot(bds)
ZarnackGroup/BindingSiteFinder documentation built on May 31, 2024, 3:29 a.m.
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| mergeCrosslinkDiagnosticsPlot | R Documentation |
Plot binding site merging diagnostics
Description
A diagnostic function that plots the number of regions to merge over the width
of these regions for each merging iteration calculated in
makeBindingSites. The function makeBindingSites
is expected to be executed prior to calling this plot function.
Usage
mergeCrosslinkDiagnosticsPlot(object)
Arguments
object |
a |
Value
a plot of type ggplot
See Also
makeBindingSites
Examples
# load clip data
files <- system.file("extdata", package="BindingSiteFinder")
load(list.files(files, pattern = ".rda$", full.names = TRUE))
bds = makeBindingSites(object = bds, bsSize = 9)
mergeCrosslinkDiagnosticsPlot(bds)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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