API for NathanSkene/EWCE
Expression Weighted Celltype Enrichment
| Global functions | |
|---|---|
| EWCE | Man page |
| EWCE-package | Man page |
| add_res_to_merging_list | Man page Source code |
| assign_cores | Man page Source code |
| bin_columns_into_quantiles | Man page Source code |
| bin_specificity_into_quantiles | Man page Source code |
| bootstrap_enrichment_test | Man page Source code |
| bootstrap_plot | Man page Source code |
| bootstrap_plots_for_transcriptome | Man page Source code |
| calculate_meanexp_for_level | Man page Source code |
| calculate_specificity_for_level | Man page Source code |
| cell_list_dist | Man page Source code |
| cells_in_ctd | Source code |
| check_annotLevels | Man page Source code |
| check_args_for_bootstrap_plot_generation | Man page Source code |
| check_bootstrap_args | Man page Source code |
| check_controlled_args | Man page Source code |
| check_ewce_expression_data_args | Man page Source code |
| check_ewce_genelist_inputs | Man page Source code |
| check_full_results | Man page Source code |
| check_generate_controlled_bootstrap_geneset | Man page Source code |
| check_group_name | Man page Source code |
| check_mtc_method | Source code |
| check_nas | Man page Source code |
| check_numeric | Man page Source code |
| check_percent_hits | Man page Source code |
| check_sce | Man page Source code |
| check_species | Man page Source code |
| compute_gene_counts | Man page Source code |
| compute_gene_scores | Man page Source code |
| controlled_geneset_enrichment | Man page Source code |
| convert_new_ewce_to_old | Man page Source code |
| convert_old_ewce_to_new | Man page Source code |
| create_background_multilist | Man page Source code |
| create_list_network | Man page Source code |
| create_quadrants | Source code |
| ctd_to_sce | Man page Source code |
| delayedarray_normalize | Man page Source code |
| drop.uninformative.genes | Source code |
| drop_nonexpressed_cells | Man page Source code |
| drop_nonexpressed_genes | Man page Source code |
| drop_uninformative_genes | Man page Source code |
| dt_to_df | Man page Source code |
| ewce_expression_data | Man page Source code |
| ewce_plot | Man page Source code |
| example_bootstrap_results | Man page Source code |
| example_transcriptome_results | Man page Source code |
| extract_matrix | Man page Source code |
| filter_ctd_genes | Man page Source code |
| filter_genes_without_1to1_homolog | Man page Source code |
| filter_nonorthologs | Man page Source code |
| filter_variance_quantiles | Man page Source code |
| fix_bad_hgnc_symbols | Man page Source code |
| fix_bad_mgi_symbols | Man page Source code |
| fix_celltype_names | Man page Source code |
| fix_celltype_names_full_results | Man page Source code |
| generate_bootstrap_plots | Man page Source code |
| generate_bootstrap_plots_exp_mats | Source code |
| generate_bootstrap_plots_for_transcriptome | Man page Source code |
| generate_celltype_data | Man page Source code |
| generate_controlled_bootstrap_geneset | Man page Source code |
| get_celltype_table | Man page Source code |
| get_ctd_levels | Man page Source code |
| get_ctd_matrix_names | Man page Source code |
| get_exp_data_for_bootstrapped_genes | Man page Source code |
| get_sig_results | Man page Source code |
| get_summed_proportions | Man page Source code |
| get_summed_proportions_iterate | Source code |
| is_32bit | Man page Source code |
| is_celltypedataset | Man page Source code |
| is_ctd_standardised | Man page Source code |
| is_delayed_array | Man page Source code |
| is_matrix | Man page Source code |
| is_sparse_matrix | Man page Source code |
| list_species | Man page Source code |
| load_rdata | Man page Source code |
| max_ctd_depth | Man page Source code |
| merge_ctd | Man page Source code |
| merge_sce | Man page Source code |
| merge_sce_list | Man page Source code |
| merge_two_expfiles | Man page Source code |
| merged_ewce | Man page Source code |
| message_parallel | Man page Source code |
| messager | Man page Source code |
| myScalesComma | Man page Source code |
| plot_ctd | Man page Source code |
| plot_log_bootstrap_distributions | Man page Source code |
| plot_with_bootstrap_distributions | Man page Source code |
| prep.dendro | Man page Source code |
| prep_dendro | Man page Source code |
| prepare_genesize_control_network | Man page Source code |
| prepare_tt | Man page Source code |
| rNorm | Source code |
| report_dge | Man page Source code |
| report_results | Man page Source code |
| run_deseq2 | Man page Source code |
| run_limma | Man page Source code |
| run_mast | Man page Source code |
| sce_lists_apply | Man page Source code |
| sce_merged_apply | Man page Source code |
| sct_normalize | Man page Source code |
| standardise_ctd | Man page Source code |
| theme_graph | Man page Source code |
| to_dataframe | Man page Source code |
| to_delayed_array | Man page Source code |
| to_sparse_matrix | Man page Source code |
